PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000468411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 87aa    MW: 10028.9 Da    PI: 10.4553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000468411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.8e-1226783894
            NAM 38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                   di+ +  +d+      +ekewyfFs+rd+ky++g+r+n a+ +gyWk tg dk++ +
  MDP0000468411 26 DINASPGSDMA---LYGEKEWYFFSSRDRKYPNGSRPNWAAGTGYWK-TGVDKHIGK 78
                   55555556664...23689***************************9.899999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.989187IPR003441NAC domain
SuperFamilySSF1019413.27E-123476IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSVKYHHMIG FRAHFQQVVS RSVQDDINAS PGSDMALYGE KEWYFFSSRD RKYPNGSRPN  60
WAAGTGYWKT GVDKHIGKPR ALXIKKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D1e-16367669110NAC domain-containing protein 19
3swp_C1e-16367669110NAC domain-containing protein 19
3swp_B1e-16367669110NAC domain-containing protein 19
3swp_A1e-16367669110NAC domain-containing protein 19
3swm_D1e-16367669110NAC domain-containing protein 19
3swm_C1e-16367669110NAC domain-containing protein 19
3swm_B1e-16367669110NAC domain-containing protein 19
3swm_A1e-16367669110NAC domain-containing protein 19
4dul_B1e-16367666107NAC domain-containing protein 19
4dul_A1e-16367666107NAC domain-containing protein 19
1ut7_B1e-16367666107NO APICAL MERISTEM PROTEIN
1ut7_A1e-16367666107NO APICAL MERISTEM PROTEIN
1ut4_B1e-16367666107NO APICAL MERISTEM PROTEIN
1ut4_A1e-16367666107NO APICAL MERISTEM PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80391e-48bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981295e-45KF198129.1 Malus hupehensis NAC domain protein (NAC143) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211751.11e-25hypothetical protein PRUPE_ppa009438mg
SwissprotQ8H1151e-24NA102_ARATH; NAC domain-containing protein 102
TrEMBLM5X1L41e-25M5X1L4_PRUPE; Uncharacterized protein
STRINGscaffold_600916.19e-23(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-26NAC domain containing protein 32